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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11980230_11989432_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11980230 - 11989432
Intron Length:
9203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTAATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
TTTCTTTTAATC
Flanking Amino Acid:
CADWKIADGVDENNTENAVS
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
80.6
0.69
0.9
82.1
33.3
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
74.2
0.74
1.1
79
29.7

Associated Gene:

Gene:
PTPN12
Ensembl Gene ID:
ENSAPLG00000012236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012752
11964408 - 12037590
73183