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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119812744_119819104_F

Intron Information:

Intron Rank:
144738
Intron Class:
major
Intron Phase:
Intron Coordinates:
119812744 - 119819104
Intron Length:
6361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
GTATTTGTAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
78
0.63
0.8
72.5
32.2
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
44.7
-0.5
2.2
51.8
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028015
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040584
119812629 - 119820078
7450