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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119899973_119900679_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119899973 - 119900679
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GCTCTCTTAACA
Flanking Amino Acid:
IPAAILAGFTGSGPIQLWQF
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
74.1
0.54
0.9
69.1
35.8
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
71.9
0.68
1.2
73.25
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015060
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015737
119898678 - 119908755
10078