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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119900944_119901076_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119900944 - 119901076
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTATGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTTTCCTTATGA
Flanking Amino Acid:
SNLNLLIDNSGKLREHESSD
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
73.5
0.53
1
75.8
31.9
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
69.6
0.61
1.9
83.19
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015060
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015737
119898678 - 119908755
10078