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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119902228_119903033_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119902228 - 119903033
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AAATCATAAAAC
Flanking Amino Acid:
LWEHLEQMIKDSQEKTQDQY
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
80.7
33.8
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
87.8
0.85
0.7
80.3
31.7
Minor 5ss
41.6
-0.9
2.5
52.6
44
Minor BPS
47.3
-0.2
2
57.96
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015060
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015737
119898678 - 119908755
10078