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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119903235_119903659_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119903235 - 119903659
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
AGTTCTCTAAAT
Flanking Amino Acid:
KEQCRLGIPNNPWLWTEQQV
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
0.9
80.7
31.6
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
85.7
0.8
0.8
79.8
32.3
Minor 5ss
40.5
-1.1
3.4
59.8
40
Minor BPS
59.3
0.37
1.8
77.56
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015060
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015737
119898678 - 119908755
10078