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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119905726_119908683_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
119905726 - 119908683
Intron Length:
2958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTAACATTAAGG
Flanking Amino Acid:
VSTMYRGMLKRQPAFDTFDS
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.3
0.75
0.9
77.1
37.1
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
47.9
-0.3
2
54.23
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015060
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015737
119898678 - 119908755
10078