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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11991927_11995575_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11991927 - 11995575
Intron Length:
3649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTATCTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTT
Flanking Amino Acid:
IRTLLLEFQNETRSVYQFHY
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72
0.49
0.8
70.2
30.4
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
57.4
0.31
1.8
77.92
38.5

Associated Gene:

Gene:
PTPN12
Ensembl Gene ID:
ENSAPLG00000012236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012752
11964408 - 12037590
73183