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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119948673_119948782_R

Intron Information:

Intron Rank:
153975
Intron Class:
major
Intron Phase:
Intron Coordinates:
119948673 - 119948782
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GCTTTCTCACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.6
0.62
0.8
72.8
31
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
46.4
-0.2
1.9
56.07
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035177
119948142 - 119949970
1829