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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119948922_119949724_R

Intron Information:

Intron Rank:
153976
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
119948922 - 119949724
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
AACACTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TGTGCTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
72.1
40.1
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
68.7
0.42
0.9
62.2
38.7
Minor 5ss
59.5
0.32
2.7
83.5
34.9
Minor BPS
75.6
0.8
1.3
79.83
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030324
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035177
119948142 - 119949970
1829