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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119957795_119958734_F

Intron Information:

Intron Rank:
127428
Intron Class:
major
Intron Phase:
Intron Coordinates:
119957795 - 119958734
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCATA
5'SS Class:
strong_major
3'SS Sequence:
GCCTTCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTGCTTTGACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
79.7
35.3
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
72
0.5
0.9
65.8
35
Minor 5ss
49
-0.1
2.5
65.8
45.4
Minor BPS
47.9
-0.1
1.7
59.78
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036209
119957680 - 119972135
14456