About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_119962480_119965874_F

Intron Information:

Intron Rank:
127430
Intron Class:
major
Intron Phase:
Intron Coordinates:
119962480 - 119965874
Intron Length:
3395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATTGTAGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
44.8
-0.4
2.3
58.31
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036209
119957680 - 119972135
14456