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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12001692_12005240_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12001692 - 12005240
Intron Length:
3549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTAATA
Flanking Amino Acid:
KKNRYKDILPFDHSRVKLTL
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.7
41.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.1
0.83
0.7
86.1
27.7
Minor 5ss
40.3
-1.1
3.1
54.9
42.3
Minor BPS
68.1
0.57
1.7
81.86
32.7

Associated Gene:

Gene:
PTPN12
Ensembl Gene ID:
ENSAPLG00000012236
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012752
11964408 - 12037590
73183