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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120027124_120102019_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120027124 - 120102019
Intron Length:
74896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
GTCACATTGACT
Flanking Amino Acid:
TVPDPAAHIKEALSVVSEDQ
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1.1
83.4
29.3
Major BPS
73
0.57
1
73.6
28.6
Major PPT
78.5
0.64
0.9
71.9
38
Minor 5ss
41.1
-1
2.7
53.3
43.9
Minor BPS
58.5
0.35
1.7
74.33
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024733
120027085 - 120136610
109526
ENSAPLT00000018830
120027036 - 120136610
109575
ENSAPLT00000017460
120027085 - 120136610
109526
ENSAPLT00000036525
120027036 - 120135825
108790