About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120102238_120116163_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
120102238 - 120116163
Intron Length:
13926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAGG
5'SS Class:
major
3'SS Sequence:
CTTCTTTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATCAAAG
Flanking Amino Acid:
ECNPNQVNGSRNSPDDCSVA
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
80
0.75
1
78.6
31
Major PPT
78.6
0.64
0.9
72.8
37.5
Minor 5ss
32.9
-1.9
2.9
40.9
44.9
Minor BPS
43.4
-0.6
2
50.27
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017460
120027085 - 120136610
109526
ENSAPLT00000017178
120071890 - 120136610
64721
ENSAPLT00000036525
120027036 - 120135825
108790
ENSAPLT00000024733
120027085 - 120136610
109526
ENSAPLT00000018830
120027036 - 120136610
109575