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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120132469_120135304_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120132469 - 120135304
Intron Length:
2836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTTCCCTAACA
Flanking Amino Acid:
GPTSSRLANPGSGQIQLWQF
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
82.1
0.72
0.8
78
29.3
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
81.7
0.99
1.5
92.55
26.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031160
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018830
120027036 - 120136610
109575
ENSAPLT00000017460
120027085 - 120136610
109526
ENSAPLT00000017178
120071890 - 120136610
64721
ENSAPLT00000036525
120027036 - 120135825
108790
ENSAPLT00000024733
120027085 - 120136610
109526