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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120211626_120215704_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120211626 - 120215704
Intron Length:
4079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTCCTCTTATTC
Flanking Amino Acid:
MDSVFLTENKANS
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
81.7
0.71
0.8
80.5
30.4
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
58.2
0.24
1.6
66.92
39.3

Associated Gene:

Gene:
PRRG1
Ensembl Gene ID:
ENSAPLG00000008867
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009213
120205430 - 120223885
18456