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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120215866_120223363_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120215866 - 120223363
Intron Length:
7498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CGTTTCTGACAT
Flanking Amino Acid:
REAFENEEKTKEFWKVYKNG
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
79.3
37.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
77.9
0.63
0.8
69.7
36.7
Minor 5ss
45.5
-0.5
3.1
67.3
43.8
Minor BPS
48.1
-0
1.8
66.37
44

Associated Gene:

Gene:
PRRG1
Ensembl Gene ID:
ENSAPLG00000008867
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009213
120205430 - 120223885
18456