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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120287383_120289041_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120287383 - 120289041
Intron Length:
1659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCTTTCC
5'SS Class:
major
3'SS Sequence:
GCTGTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CAACTTATAACA
Flanking Amino Acid:
ELVHWCHGAPGIAYLFAKAY
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
60.9
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.7
0.44
0.9
61.8
40
Minor 5ss
36.8
-1.5
2.8
46.5
41.6
Minor BPS
48.4
-0.1
1.6
55.39
37

Associated Gene:

Gene:
LANCL3
Ensembl Gene ID:
ENSAPLG00000008878
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009230
120260946 - 120290438
29493