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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120310763_120319198_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120310763 - 120319198
Intron Length:
8436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTAGA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGGTTCTGATTT
Flanking Amino Acid:
VLQQEITAARSVFMVLSLLS
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.7
40.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
88.5
0.87
0.6
85
22.5
Minor 5ss
35.4
-1.7
3
41.6
39.3
Minor BPS
51.3
0.12
1.7
69
42.3

Associated Gene:

Gene:
XK
Ensembl Gene ID:
ENSAPLG00000022338
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030017
120298762 - 120321275
22514