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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120331021_120332586_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120331021 - 120332586
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TCTCCAATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTCATTTAATA
Flanking Amino Acid:
KFFYTRELLGHALALARAPA
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77
0.61
0.9
69.7
34.3
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
64.1
0.44
1.4
72.27
33.1

Associated Gene:

Gene:
CYBB
Ensembl Gene ID:
ENSAPLG00000008961
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009356
120328749 - 120346869
18121