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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120341733_120342378_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120341733 - 120342378
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTCTGTTAACA
Flanking Amino Acid:
IPQFSGNPPMTWKWVVGPMF
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.7
0.56
1
69.7
39.8
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
60.4
0.32
2
74.85
36.4

Associated Gene:

Gene:
CYBB
Ensembl Gene ID:
ENSAPLG00000008961
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009356
120328749 - 120346869
18121