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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120344147_120344440_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
120344147 - 120344440
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTACA
5'SS Class:
major
3'SS Sequence:
CTTTTGATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATTTCTTAAGA
Flanking Amino Acid:
QEFQEAWKLPKIAVDGPFGT
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.1
32.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84.2
0.77
0.8
81.4
34.9
Minor 5ss
43.8
-0.7
2.4
52.2
38.6
Minor BPS
67.3
0.54
1.6
72.95
38.7

Associated Gene:

Gene:
CYBB
Ensembl Gene ID:
ENSAPLG00000008961
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009356
120328749 - 120346869
18121