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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120344604_120345463_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120344604 - 120345463
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTTAC
U12 Branch Point Sequence:
TGTCCCCTGACA
Flanking Amino Acid:
HDATNLKLKKIYFYWLCRDT
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.8
34
Major BPS
62.6
0.31
1.1
55.1
41.7
Major PPT
85.3
0.79
0.8
77.4
36.9
Minor 5ss
36.2
-1.6
3.5
52.1
45.1
Minor BPS
62.2
0.38
1.7
74.31
36.4

Associated Gene:

Gene:
CYBB
Ensembl Gene ID:
ENSAPLG00000008961
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009356
120328749 - 120346869
18121