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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120346021_120346742_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
120346021 - 120346742
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAACCTG
5'SS Class:
major
3'SS Sequence:
ATTTTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCTTCACA
Flanking Amino Acid:
EFKTIARQHPGSRIGVFLCG
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
56.9
47.7
Major BPS
100
1.24
0.5
100
0
Major PPT
85.6
0.8
0.7
80.5
30.9
Minor 5ss
40.4
-1.1
3.2
47.8
47.8
Minor BPS
70.7
0.65
1.7
81.19
34.3

Associated Gene:

Gene:
CYBB
Ensembl Gene ID:
ENSAPLG00000008961
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009356
120328749 - 120346869
18121