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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120362996_120364109_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120362996 - 120364109
Intron Length:
1114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TAATCTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTGTAATA
Flanking Amino Acid:
SSCFWDTTTDGTCTVRWENR
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
74.9
36.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.8
0.6
0.8
74.5
35.8
Minor 5ss
48.6
-0.1
2.8
64.8
41.1
Minor BPS
62.4
0.39
2
78
33.3

Associated Gene:

Gene:
DYNLT3
Ensembl Gene ID:
ENSAPLG00000031155
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027334
120362596 - 120368708
6113