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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120364188_120365160_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120364188 - 120365160
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TCTGCTTTAAAG
Flanking Amino Acid:
VKLGKTYKYIVTCAVMQRSG
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
83.1
0.74
0.9
80.5
36.7
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
61.6
0.22
1.6
63.96
44.2

Associated Gene:

Gene:
DYNLT3
Ensembl Gene ID:
ENSAPLG00000031155
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027334
120362596 - 120368708
6113