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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120365285_120367037_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120365285 - 120367037
Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACTGTAACT
Flanking Amino Acid:
ADEAHNIVKECIESVLGKAD
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
85.9
0.81
0.8
80.5
30
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
66.1
0.58
2
88.46
36.7

Associated Gene:

Gene:
DYNLT3
Ensembl Gene ID:
ENSAPLG00000031155
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027334
120362596 - 120368708
6113