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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120452737_120453620_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
120452737 - 120453620
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGCACA
5'SS Class:
major
3'SS Sequence:
ACTTGATCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTGCTAATAATT
Flanking Amino Acid:
VADEKKQRTDPYVKAYLLPD
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.4
62.9
43.4
Major BPS
80
0.75
1
78.6
31
Major PPT
74.2
0.54
0.9
66.6
39
Minor 5ss
41.5
-0.9
2.8
54.7
42.4
Minor BPS
49.1
0.01
1.8
71.27
39.6

Associated Gene:

Gene:
SYTL5
Ensembl Gene ID:
ENSAPLG00000009713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010117
120450817 - 120464307
13491