About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120460831_120463371_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
120460831 - 120463371
Intron Length:
2541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGTGTT
5'SS Class:
major
3'SS Sequence:
CTATATGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTTCTATATGT
Flanking Amino Acid:
SGGTSDTFVKGYLLPDDSKA
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
76.2
39.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
74.6
0.55
1
65.3
45
Minor 5ss
33.6
-1.9
3.3
41.8
44.7
Minor BPS
52.2
0.15
2.1
80.49
41.6

Associated Gene:

Gene:
SYTL5
Ensembl Gene ID:
ENSAPLG00000009713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010117
120450817 - 120464307
13491