About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120480124_120480768_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120480124 - 120480768
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTCATGCCTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTCTTTCATT
Flanking Amino Acid:
GTCKFLVKVRVRRCVKLNAP
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
64.8
0.33
1.1
63.6
37.3
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
66.9
0.61
1.7
83.09
39.1

Associated Gene:

Gene:
SRPX
Ensembl Gene ID:
ENSAPLG00000009886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010298
120475331 - 120516972
41642