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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120487523_120487986_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120487523 - 120487986
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TTTCCCTAAATC
Flanking Amino Acid:
KRWSGKVLCKQKRCPTLSMP
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.3
81.8
38.5
Major BPS
73
0.57
1
73.6
28.6
Major PPT
82.6
0.73
0.8
76.8
31.7
Minor 5ss
38.8
-1.3
2.8
50.7
39.1
Minor BPS
69.9
0.6
1.6
79.77
35.4

Associated Gene:

Gene:
SRPX
Ensembl Gene ID:
ENSAPLG00000009886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010298
120475331 - 120516972
41642