Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120529261_120530589_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

120529261 - 120530589

Intron Length:

1329

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGAGTA

5'SS Class:

strong_major

3'SS Sequence:

TATATTATTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TTTATATTATTG

Flanking Amino Acid:

TTQKETIIEQEKESTGNHTV

Intron Amino Acid Position:

665

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

75.2

35.1

Major BPS

79.2

0.73

75.3

39.4

Major PPT

76.3

0.59

0.9

71.1

39.2

Minor 5ss

33.6

-1.9

3.5

46.2

Minor BPS

48.7

-0.2

1.9

60.78

41.4

Associated Gene:

Gene:

RPGR

Ensembl Gene ID:

ENSAPLG00000010057

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048254

120524860 - 120588196

63337

ENSAPLT00000025150

120525379 - 120587234

61856