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Intron Name: Anas_platyrhynchos_platyrhynchos_1_120549284_120550506_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

120549284 - 120550506

Intron Length:

1223

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAATTGT

5'SS Class:

strong_major

3'SS Sequence:

GTTTACCTTGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAA

U12 Branch Point Sequence:

ATTTGTTTACCT

Flanking Amino Acid:

VPVEERHHEKEKNRQKDEPG

Intron Amino Acid Position:

490

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

77.2

33.9

Major BPS

77.9

0.69

0.8

77.9

25.8

Major PPT

69.4

0.44

1.1

68.6

37.2

Minor 5ss

35.8

-1.6

49.7

46.6

Minor BPS

59.6

0.38

81.74

40.3

Associated Gene:

Gene:

RPGR

Ensembl Gene ID:

ENSAPLG00000010057

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048254

120524860 - 120588196

63337

ENSAPLT00000025150

120525379 - 120587234

61856

ENSAPLT00000010471

120525379 - 120588196

62818