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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120553525_120554049_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120553525 - 120554049
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGTTATTAATA
Flanking Amino Acid:
CGENHTAVIAENGLMFTFGD
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80
0.67
0.9
74.8
34
Minor 5ss
42.1
-0.9
2.4
51.8
44.8
Minor BPS
67.5
0.55
1.5
75.87
35.6

Associated Gene:

Gene:
RPGR
Ensembl Gene ID:
ENSAPLG00000010057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048254
120524860 - 120588196
63337
ENSAPLT00000025150
120525379 - 120587234
61856
ENSAPLT00000010471
120525379 - 120588196
62818