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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120554206_120566008_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120554206 - 120566008
Intron Length:
11803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTACATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTGTTAACT
Flanking Amino Acid:
CGGEHTVVLTETDVYTFGLG
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.1
0.63
0.9
74
40.5
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
69.2
0.68
2
88.33
36.7

Associated Gene:

Gene:
RPGR
Ensembl Gene ID:
ENSAPLG00000010057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025150
120525379 - 120587234
61856
ENSAPLT00000010471
120525379 - 120588196
62818
ENSAPLT00000048254
120524860 - 120588196
63337