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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120580354_120586824_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120580354 - 120586824
Intron Length:
6471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CGGATTCTAACT
Flanking Amino Acid:
CGDEHTAVVTGNGKLYMFGS
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.2
85.3
32.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
86.2
0.81
0.7
83.9
24.2
Minor 5ss
35.7
-1.6
2.7
45.8
42.3
Minor BPS
47.9
-0
1.7
61.32
42.7

Associated Gene:

Gene:
RPGR
Ensembl Gene ID:
ENSAPLG00000010057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025150
120525379 - 120587234
61856
ENSAPLT00000010471
120525379 - 120588196
62818
ENSAPLT00000048254
120524860 - 120588196
63337