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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120586951_120587137_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
120586951 - 120587137
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTCACTAAAAT
Flanking Amino Acid:
NPIWKTCLNSKSGAVFTFGK
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.8
0.74
0.8
81.4
35.9
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
51.4
0.12
1.9
74.66
41.3

Associated Gene:

Gene:
RPGR
Ensembl Gene ID:
ENSAPLG00000010057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025150
120525379 - 120587234
61856