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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120590939_120594688_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
120590939 - 120594688
Intron Length:
3750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GTTCTTTTGACA
Flanking Amino Acid:
WNNKHLLRHFWRGPPAQMNV
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
76.5
0.6
0.9
72.2
37
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
65.7
0.49
1.2
72
33.3

Associated Gene:

Gene:
OTC
Ensembl Gene ID:
ENSAPLG00000010113
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010559
120590833 - 120618406
27574