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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120602336_120607682_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
120602336 - 120607682
Intron Length:
5347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTAAG
5'SS Class:
major
3'SS Sequence:
TGCTGTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATGTTTGACT
Flanking Amino Acid:
GTNESLTDTARVLSSMTNAI
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
70
42.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
66.9
0.38
0.9
58.4
38.4
Minor 5ss
30
-2.3
2.7
33.2
42
Minor BPS
65.9
0.58
1.8
83.55
37.7

Associated Gene:

Gene:
OTC
Ensembl Gene ID:
ENSAPLG00000010113
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010559
120590833 - 120618406
27574