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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120614754_120614862_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120614754 - 120614862
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTATTCACATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATTTCCTGATCT
Flanking Amino Acid:
MKITEQYSKKYGTKLLLTTD
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
34.6
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
69.4
0.44
0.9
69.2
36.7
Minor 5ss
37.8
-1.4
3.3
51.1
45.6
Minor BPS
69.3
0.68
1.7
87.75
37.2

Associated Gene:

Gene:
OTC
Ensembl Gene ID:
ENSAPLG00000010113
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010559
120590833 - 120618406
27574