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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120615013_120616176_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120615013 - 120616176
Intron Length:
1164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTC
Flanking Amino Acid:
AFQGYQITMQTVKSAAPNWT
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.9
0.67
0.8
74.8
35.1
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
67.3
0.52
1.5
77.16
33.3

Associated Gene:

Gene:
OTC
Ensembl Gene ID:
ENSAPLG00000010113
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010559
120590833 - 120618406
27574