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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120714511_120722913_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120714511 - 120722913
Intron Length:
8403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGGAT
U12 Branch Point Sequence:
GATGCCTTCACT
Flanking Amino Acid:
AQAPELAQSQITGVILLAVG
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
71.4
0.53
1.4
71.4
45.1
Major PPT
85.5
0.8
0.7
80
25.3
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
62.5
0.47
1.9
77.93
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026339
120714379 - 120741290
26912