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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12077043_12081886_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12077043 - 12081886
Intron Length:
4844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTCCTTTATA
Flanking Amino Acid:
RNGKIIYTWKHLYMFERDLR
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
78.6
35.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
82.7
0.74
0.7
77.3
30.7
Minor 5ss
38.1
-1.3
3.1
52.9
44.3
Minor BPS
74.1
0.75
1.5
81.62
33

Associated Gene:

Gene:
GSAP
Ensembl Gene ID:
ENSAPLG00000012156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040890
12073688 - 12119086
45399