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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1208351_1209046_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1208351 - 1209046
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
GTGTGTCTAACA
Flanking Amino Acid:
FVVKFYGPQGTPYEGGVWKV
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
49.1
-0
2.1
64.47
42.1

Associated Gene:

Gene:
UBE2H
Ensembl Gene ID:
ENSAPLG00000019791
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035914
1205069 - 1228552
23484