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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120858023_120865564_F

Intron Information:

Intron Rank:
133388
Intron Class:
major
Intron Phase:
Intron Coordinates:
120858023 - 120865564
Intron Length:
7542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
79.8
0.67
1
77.5
35.6
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
79.8
0.93
1.2
88.1
28.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021736
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044602
120857592 - 120866228
8637