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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12086799_12089508_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12086799 - 12089508
Intron Length:
2710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TATTTGCTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATG
Flanking Amino Acid:
LDISVTDTRVKLVNFGYDDC
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
79.7
33.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.8
0.56
0.9
69.3
36.6
Minor 5ss
38.5
-1.3
3.3
52.3
38.8
Minor BPS
67.4
0.41
1.5
70.58
36.8

Associated Gene:

Gene:
GSAP
Ensembl Gene ID:
ENSAPLG00000012156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032612
12073688 - 12119086
45399
ENSAPLT00000012725
12073688 - 12119086
45399
ENSAPLT00000040890
12073688 - 12119086
45399
ENSAPLT00000033268
12073688 - 12119086
45399