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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_120924538_120932206_F

Intron Information:

Intron Rank:
142093
Intron Class:
major
Intron Phase:
Intron Coordinates:
120924538 - 120932206
Intron Length:
7669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
CTTGGCCCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTAAAAATAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
63
38.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
65.8
0.36
1
59.6
36.8
Minor 5ss
40.5
-1.1
3
50.1
40.9
Minor BPS
43.2
-0.5
2
58.52
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026504
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034841
120923862 - 120933372
9511