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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12094532_12096787_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12094532 - 12096787
Intron Length:
2256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TATGTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTATTTTTAAAT
Flanking Amino Acid:
IIYSIYFLHKGYSKTFTVSL
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.7
0.53
0.9
66.4
40.4
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
67.8
0.64
1.3
78.53
37.3

Associated Gene:

Gene:
GSAP
Ensembl Gene ID:
ENSAPLG00000012156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032612
12073688 - 12119086
45399
ENSAPLT00000012725
12073688 - 12119086
45399
ENSAPLT00000040890
12073688 - 12119086
45399
ENSAPLT00000033268
12073688 - 12119086
45399