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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12098575_12098886_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12098575 - 12098886
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATCTGACA
Flanking Amino Acid:
VRSTADLEMKIICWISENLS
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
100
1.24
0.5
100
0
Major PPT
76.7
0.6
1
72.7
37.3
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
49.8
-0
1.8
69.94
35.6

Associated Gene:

Gene:
GSAP
Ensembl Gene ID:
ENSAPLG00000012156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032612
12073688 - 12119086
45399
ENSAPLT00000012725
12073688 - 12119086
45399
ENSAPLT00000040890
12073688 - 12119086
45399
ENSAPLT00000033268
12073688 - 12119086
45399